Dr. Martin Chalfie is pictured.
University Professor
1018 Fairchild Center, M.C. 2446
New York
Office Phone: 
(212) 854-8870
Lab Phone: 
(212) 854-3066
(212) 865-8246
Short Research Description: 

Developmental genetics of identified nerve cells in C. elegans.

Full Research Description: 

We are using the nematode Caenorhabditis elegans to investigate aspects of nerve cell development and function. The wealth of developmental, anatomical, genetic, and molecular information available for C. elegans provides a powerful and multifaceted approach to these studies. Our work has focused on the study of a set of six neurons that are the sensory receptors for gentle touch (the touch cells), to address two questions: 1) How is neuronal cell fate determined? and 2) What is the molecular basis of mechanosensation, a sensory modality that underlies a variety of senses(e.g., touch, hearing, and balance)? We also work on neuronal degeneration, microtubule structure and function, and channel structure and function. Facilitating these studies is the development of new experimental methods, such as Green Fluorescent Protein and reconstituted GFP as gene and protein markers, a two component system (recCaspase) to selectively kill particular cells, a method to generate and insert temperature-sensitive strains for virtually any C. elegans gene and a method for cell-specific RNAi.

We initially approached touch cell development by mutational analysis, obtaining more than 450 mutations (in 17 genes) that produce a touch insensitive phenotype. These touch genes are needed for the generation, specification, and function of the cells. The first two groups contain genes that regulate touch cell development, and the last group (function) contains genes that are developmental targets of this regulation. Many of the genes that regulate touch cell differentiation are transcription factors. In addition we have identified several other genes that in combination with these genes specify the number and differentiation of the touch cells. Twelve touch genes are needed for touch cell function. Using genetics, molecular biology, and electrophysiology, we have identified a transduction channel complex with proteins encoded by four of these genes that underlies the touch response in these cells. Two of the proteins, MEC-4 and MEC-10, form the pore of the channel; the other two proteins, MEC-2 and MEC-6 are associated with the pore-forming proteins and are essential for channel activity. MEC-2 is of particular current interest because it is part of a large family of cholesterol-binding proteins. The channel complex is localized as puncta along the touch receptor neuron process. This localization requires components in the extracellular matrix. Two of these components, MEC-1 and MEC-9 are made the touch cells; a third, the collagen MEC-5, is not.

We are currently studying how these and other genes expressed in these cells act to transduce touch. Our current model is that the channel complex is associated with the extracellular matrix. This tethering can lead to movement of the complex in the membrane leading to its opening.  PubMed Listing of Dr. Chalfie's Publications

Representative Publications: 
  • Bounoutas A, Kratz J, Emtage L, Ma C, Nguyen KC, Chalfie M. (2011 Mar 8) Microtubule depolymerization in Caenorhabditis elegans touch receptor neurons reduces gene expression through a p38 MAPK pathway. Proc Natl Acad Sci U S A 108(10): 3982-7. Article
  • Topalidou I, van Oudenaarden A, Chalfie M. (2011 Mar 8) Caenorhabditis elegans aristaless/Arx gene alr-1 restricts variable gene expression. Proc Natl Acad Sci U S A 108(10): 4063-8. Article
  • Calixto A, Chelur D, Topalidou I, Chen X, Chalfie M. (2010) Enhanced neuronal RNAi in C. elegans using SID-1. Nat Methods. 7(7): 554-9. Article
  • Huber, T. B., et al. (2006) Podocin and MEC-2 Bind Cholesterol to Regulate the Activity of Associated Ion Channels Proc. Natl. Acad. Sci. USA 103: 17079-17086.
  • Chelur, D., and Chalfie, M. (2007) Targeted cell killing by reconstituted caspases Proc. Natl. Acad. Sci. USA 2283-2288.
  • R. O’Hagan, M. Chalfie, and M. B. Goodman (2005) The MEC-4 DEG/ENaC channel of C. elegans touch receptor neurons transduces mechanical signals. Nature Neuroscience 8: 43-50. Article
  • S. Zhang, C. Ma, and M. Chalfie. (2004) Combinatorial marking of cells and organelles with reconstituted fluorescent proteins. Cell 119: 137-144. Article

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